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At3g11380


Description : Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAY6]


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g11380
Cluster HCCA clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
420699 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
428276 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
55637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At3g11350 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.04 Orthogroups_2024-Update
Glyma.10G026151 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os12g34340 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_29806g0010 No alias (at1g60770 : 282.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00030176-RA No alias (at1g02150 : 296.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Sobic.010G252200.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc02g078330 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0032299 ribonuclease H2 complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 450 496
IPR002885 Pentatricopeptide_repeat 184 212
IPR002885 Pentatricopeptide_repeat 145 177
No external refs found!