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  5. HORVU4Hr1G059090.11

HORVU4Hr1G059090.11


Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex


Gene families : OG_42_0001005 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001005_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G059090.11
Cluster HCAA Clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Mp2g07590.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 Orthogroups_2024-Update
PSME_00000609-RA No alias (at5g02530 : 160.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Potri.017G129900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Seita.9G450900.1 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 Orthogroups_2024-Update
evm.model.contig_3435.12 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 109 177
IPR025715 FoP_C 213 265
No external refs found!