HORVU4Hr1G061900.2

Description : component *(eL40) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU4Hr1G061900.2
Cluster	HCAA Clusters: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
At5g37640	No alias	Polyubiquitin 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHQ6]	0.03	Orthogroups_2024-Update
Cre09.g396400	No alias	related to ubiquitin 1	0.03	Orthogroups_2024-Update
GRMZM2G047727	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	Orthogroups_2024-Update
HORVU3Hr1G110970.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU5Hr1G019590.12	No alias	UBQ ubiquitin-fold protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G019600.6	No alias	UBQ ubiquitin-fold protein	0.04	Orthogroups_2024-Update
HORVU6Hr1G014970.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU6Hr1G016150.3	No alias	UBQ ubiquitin-fold protein	0.03	Orthogroups_2024-Update
HORVU6Hr1G026260.1	No alias	UBQ ubiquitin-fold protein	0.03	Orthogroups_2024-Update
HORVU7Hr1G102840.1	No alias	UBQ ubiquitin-fold protein	0.06	Orthogroups_2024-Update
MA_10000516g0010	No alias	(at2g47110 : 160.0) polyubiquitin gene; ubiquitin 6...	0.02	Orthogroups_2024-Update
MA_455989g0010	No alias	(at1g31340 : 260.0) Encodes a ubiquitin-related protein...	0.03	Orthogroups_2024-Update
Pp1s351_6V6	No alias	polyubiquitin containing 7 ubiquitin monomers	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001975	Ribosomal_L40e	140	188
IPR000626	Ubiquitin_dom	63	134

External Links

No external refs found!

HORVU4Hr1G061900.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation