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At3g12000


Description : S glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9LHM1]


Gene families : OG_42_0000348 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000348_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g12000
Cluster HCCA clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Glyma.13G283100 No alias S-locus lectin protein kinase family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0048544 recognition of pollen IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001480 Bulb-type_lectin_dom 86 191
IPR000858 S_locus_glycoprot_dom 223 335
IPR003609 Pan_app 356 417
No external refs found!