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  5. HORVU4Hr1G070250.3

HORVU4Hr1G070250.3


Description : histone *(H2A)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G070250.3
Cluster HCAA Clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
76653 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Bradi1g66360 No alias histone H2A 6 0.02 Orthogroups_2024-Update
Bradi2g23090 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Brara.H02855.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.03 Orthogroups_2024-Update
GRMZM2G107540 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.05 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.06 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Glyma.19G151400 No alias gamma histone variant H2AX 0.02 Orthogroups_2024-Update
Glyma.19G234100 No alias histone H2A 7 0.02 Orthogroups_2024-Update
HORVU5Hr1G105090.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU6Hr1G006120.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G011490.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G117230.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
LOC_Os05g38640 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os07g36130 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g25120 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.04 Orthogroups_2024-Update
MA_10434390g0010 No alias (at5g54640 : 110.0) Isolated from T-DNA insertion line,... 0.02 Orthogroups_2024-Update
MA_3822944g0010 No alias (p50567|h2a_chlre : 97.1) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
MA_7320190g0010 No alias (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... 0.03 Orthogroups_2024-Update
MA_924620g0010 No alias (q2hu68|h2a1_medtr : 180.0) Probable histone H2A.1 -... 0.03 Orthogroups_2024-Update
Seita.2G343400.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sopen09g005140 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen12g001250 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 90 121
IPR007125 Histone_H2A/H2B/H3 9 86
No external refs found!