HORVU4Hr1G075710.1

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU4Hr1G075710.1
Cluster	HCAA Clusters: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
166994	No alias	Ribosomal protein L4/L1 family	0.1	Orthogroups_2024-Update
At3g09630	No alias	60S ribosomal protein L4-1...	0.02	Orthogroups_2024-Update
At5g02870	No alias	60S ribosomal protein L4-2...	0.03	Orthogroups_2024-Update
Bradi1g05510	No alias	Ribosomal protein L4/L1 family	0.18	Orthogroups_2024-Update
Bradi1g55510	No alias	Ribosomal protein L4/L1 family	0.21	Orthogroups_2024-Update
Brara.A03522.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.22	Orthogroups_2024-Update
Brara.C00088.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Brara.E03076.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.24	Orthogroups_2024-Update
Brara.J02849.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Cre09.g397697	No alias	Ribosomal protein L4/L1 family	0.06	Orthogroups_2024-Update
GRMZM2G007695	No alias	Ribosomal protein L4/L1 family	0.1	Orthogroups_2024-Update
GRMZM2G100403	No alias	Ribosomal protein L4/L1 family	0.11	Orthogroups_2024-Update
Glyma.10G048600	No alias	Ribosomal protein L4/L1 family	0.12	Orthogroups_2024-Update
Glyma.13G136400	No alias	Ribosomal protein L4/L1 family	0.12	Orthogroups_2024-Update
Kfl00456_0100	kfl00456_0100_v1.1	(at3g09630 : 489.0) Ribosomal protein L4/L1 family;...	0.06	Orthogroups_2024-Update
LOC_Os07g08330	No alias	ribosomal protein L4, putative, expressed	0.04	Orthogroups_2024-Update
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.09	Orthogroups_2024-Update
Potri.016G084400	No alias	Ribosomal protein L4/L1 family	0.06	Orthogroups_2024-Update
Potri.T159800	No alias	Ribosomal protein L4/L1 family	0.09	Orthogroups_2024-Update
Pp1s10_102V6	No alias	60s ribosomal protein l4	0.1	Orthogroups_2024-Update
Pp1s18_113V6	No alias	60s ribosomal protein l4	0.06	Orthogroups_2024-Update
Pp1s40_305V6	No alias	60s ribosomal protein l4	0.09	Orthogroups_2024-Update
Seita.2G055300.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Seita.9G056000.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Sobic.001G057300.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Sobic.002G054000.1	No alias	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Solyc09g007250	No alias	60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR)	0.14	Orthogroups_2024-Update
Solyc10g084350	No alias	60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR)	0.07	Orthogroups_2024-Update
Solyc10g086010	No alias	60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR)	0.17	Orthogroups_2024-Update
Sopen09g002120	No alias	Ribosomal protein L4/L1 family	0.16	Orthogroups_2024-Update
Sopen10g033800	No alias	Ribosomal protein L4/L1 family	0.21	Orthogroups_2024-Update
Sopen10g035380	No alias	Ribosomal protein L4/L1 family	0.14	Orthogroups_2024-Update
evm.model.contig_2049.5	No alias	(at3g09630 : 394.0) Ribosomal protein L4/L1 family;...	0.07	Orthogroups_2024-Update
evm.model.tig00022075.53	No alias	(at3g09630 : 404.0) Ribosomal protein L4/L1 family;...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003729	mRNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Predicted GO
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006188	IMP biosynthetic process	IEP	Predicted GO
BP	GO:0006378	mRNA polyadenylation	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006553	lysine metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Predicted GO
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009085	lysine biosynthetic process	IEP	Predicted GO
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Predicted GO
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046040	IMP metabolic process	IEP	Predicted GO
BP	GO:0046451	diaminopimelate metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	46	286
IPR025755	Ribos_L4_C_dom	299	371

External Links

No external refs found!

HORVU4Hr1G075710.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation