HORVU4Hr1G082030.2


Description : RAV/NGATHA-type transcription factor & AP2-RAV-type transcription factor *(EDF)


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G082030.2
Cluster HCAA Clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
At1g01030 No alias NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3] 0.05 Orthogroups_2024-Update
Brara.D00076.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os01g04750 No alias B3 DNA binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_178646g0010 No alias (at1g68840 : 271.0) Rav2 is part of a complex that has... 0.03 Orthogroups_2024-Update
Seita.9G342100.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Solyc04g007000 No alias AP2/B3 transcription factor family protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
Type GO Term Name Evidence Source
BP GO:0006553 lysine metabolic process IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 188 253
IPR001471 AP2/ERF_dom 74 122
No external refs found!