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  5. HORVU4Hr1G088210.35

HORVU4Hr1G088210.35


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0002100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002100_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G088210.35
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
440060 No alias transcription regulators 0.02 Orthogroups_2024-Update
At1g02080 No alias Transcription regulator [Source:UniProtKB/TrEMBL;Acc:F4HVV6] 0.03 Orthogroups_2024-Update
Bradi1g78550 No alias transcription regulators 0.08 Orthogroups_2024-Update
Bradi3g33190 No alias transcription regulators 0.08 Orthogroups_2024-Update
Brara.J00008.1 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
MA_42843g0010 No alias (at1g02080 : 1165.0) transcription regulators; FUNCTIONS... 0.05 Orthogroups_2024-Update
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 Orthogroups_2024-Update
Pp1s41_25V6 No alias T7I23.15; transcriptional regulator-related [Arabidopsis... 0.04 Orthogroups_2024-Update
Seita.9G325500.1 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.05 Orthogroups_2024-Update
Sobic.001G299700.1 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
Solyc01g090780 No alias CCR4-NOT transcription complex subunit 1 (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
evm.model.tig00000767.19 No alias (at1g02080 : 377.0) transcription regulators; FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032194 CNOT1_HEAT 30 175
IPR024557 CCR4-Not_Not1su_DUF3819 882 1023
IPR032193 CNOT1_TTP_bind 209 371
IPR032191 CNOT1_CAF1_bind 527 746
No external refs found!