1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At3g13228

At3g13228


Description : RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LTU8]


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g13228
Cluster HCCA clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
A4A49_24130 No alias e3 ubiquitin-protein ligase ring1-like protein 0.03 Orthogroups_2024-Update
A4A49_41488 No alias e3 ubiquitin-protein ligase rduf1 0.03 Orthogroups_2024-Update
At1g14200 No alias At1g14200 [Source:UniProtKB/TrEMBL;Acc:Q9XI67] 0.03 Orthogroups_2024-Update
At3g30460 No alias RING/U-box superfamily protein... 0.03 Orthogroups_2024-Update
Bradi3g37800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g56300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.C00964.1 No alias signal transducer of abscisic acid perception *(AIP2) 0.03 Orthogroups_2024-Update
Brara.C03342.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E02211.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.G00930.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
Brara.G02768.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I03890.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.I05006.1 No alias E3 ubiquitin ligase *(SNIPER) 0.04 Orthogroups_2024-Update
Brara.J02450.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre10.g422050 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G021480 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G157855 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G164358 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Glyma.04G251600 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Glyma.10G089800 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.10G286700 No alias COP1-interacting protein 8 0.03 Orthogroups_2024-Update
Glyma.13G072800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G002870.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G051760.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G080320.4 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g09820 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g26420 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g43740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g04680 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04660 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10428335g0020 No alias (at3g19950 : 167.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_170709g0010 No alias (at5g01980 : 161.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_79051g0010 No alias (at3g19950 : 171.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_816375g0010 No alias (at2g40830 : 158.0) Encodes a putative RING-H2 finger... 0.03 Orthogroups_2024-Update
Potri.005G062400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.012G065300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G116000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G127600 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Seita.6G190900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G163700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.8G172800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G371300.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.002G386000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G165900.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Solyc08g067290 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G20910.1) 0.04 Orthogroups_2024-Update
Solyc12g008480 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT1G60360.1) 0.03 Orthogroups_2024-Update
Sopen01g012080 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen02g015860 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen03g029300 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen03g033750 No alias Ring finger domain 0.04 Orthogroups_2024-Update
Sopen07g026890 No alias Ring finger domain 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 274 316
No external refs found!