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  5. HORVU5Hr1G011460.1

HORVU5Hr1G011460.1


Description : group-II intron splicing RNA helicase *(PMH)


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G011460.1
Cluster HCAA Clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
10677 No alias DEAD box RNA helicase (RH3) 0.02 Orthogroups_2024-Update
99603 No alias putative mitochondrial RNA helicase 2 0.02 Orthogroups_2024-Update
Bradi4g02000 No alias putative mitochondrial RNA helicase 1 0.06 Orthogroups_2024-Update
Bradi4g35490 No alias DEAD box RNA helicase (PRH75) 0.05 Orthogroups_2024-Update
Brara.F02796.1 No alias group-II intron splicing RNA helicase *(RH3) 0.03 Orthogroups_2024-Update
GRMZM2G565140 No alias putative mitochondrial RNA helicase 2 0.02 Orthogroups_2024-Update
Glyma.02G281200 No alias putative mitochondrial RNA helicase 2 0.05 Orthogroups_2024-Update
Potri.005G000500 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
Potri.006G024100 No alias putative mitochondrial RNA helicase 2 0.06 Orthogroups_2024-Update
Seita.2G278900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.3G386700.1 No alias group-II intron splicing RNA helicase *(PMH) 0.06 Orthogroups_2024-Update
Sobic.002G031700.1 No alias group-II intron splicing RNA helicase *(PMH) 0.04 Orthogroups_2024-Update
Sobic.002G268100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G165900.1 No alias group-II intron splicing RNA helicase *(PMH) 0.04 Orthogroups_2024-Update
Sopen07g023350 No alias DEAD/DEAH box helicase 0.05 Orthogroups_2024-Update
evm.model.tig00000093.151 No alias (at5g26742 : 291.0) embryo defective 1138 (emb1138);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004834 tryptophan synthase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 130 298
IPR001650 Helicase_C 336 444
No external refs found!