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  5. At3g13820

At3g13820


Description : F-box protein At3g13820 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW6]


Gene families : OG_42_0000379 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g13820
Cluster HCCA clusters: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
At3g21170 No alias Putative F-box protein At3g21170... 0.03 Orthogroups_2024-Update
At3g22700 No alias F-box protein At3g22700 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUJ1] 0.03 Orthogroups_2024-Update
At3g22710 No alias Putative F-box protein At3g22710... 0.03 Orthogroups_2024-Update
At3g22770 No alias F-box associated ubiquitination effector family protein... 0.03 Orthogroups_2024-Update
Brara.A03231.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03646.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03996.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.D00250.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D02210.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E01343.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G02249.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.H00972.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.J01307.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR006527 F-box-assoc_dom_typ1 195 380
IPR001810 F-box_dom 3 40
No external refs found!