HORVU5Hr1G019730.1


Description : E3 ubiquitin ligase *(RBR-Helicase)


Gene families : OG_42_0006028 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006028_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G019730.1
Cluster HCAA Clusters: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g42900 No alias helicase domain-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp7g01000.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000966 RNA 5'-end processing IEP Predicted GO
BP GO:0001682 tRNA 5'-leader removal IEP Predicted GO
MF GO:0003689 DNA clamp loader activity IEP Predicted GO
CC GO:0005663 DNA replication factor C complex IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033170 protein-DNA loading ATPase activity IEP Predicted GO
BP GO:0034471 ncRNA 5'-end processing IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0099116 tRNA 5'-end processing IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 1643 1687
IPR002867 IBR_dom 1561 1622
IPR011709 DUF1605 840 914
IPR001650 Helicase_C 499 617
IPR007502 Helicase-assoc_dom 678 772
No external refs found!