- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat-containing protein At3g13880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRV9]
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Arabidopsis release: At3g13880 | |
| Cluster | HCCA clusters: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_19306 | No alias | pentatricopeptide repeat-containing protein,... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g22990 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g47510 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g59950 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.F01619.1 | No alias | RNA editing factor *(ECD1) | 0.03 | Orthogroups_2024-Update | |
| Brara.J00794.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.J02567.1 | No alias | RNA editing factor *(MEF37) | 0.03 | Orthogroups_2024-Update | |
| Glyma.06G161900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.07G029000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G180500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G146900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| LOC_Os07g05560 | No alias | expressed protein | 0.02 | Orthogroups_2024-Update | |
| PSME_00005325-RA | No alias | (at3g13770 : 417.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00048766-RA | No alias | (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| Potri.001G066100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.001G258500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.002G175900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.002G239600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.003G088600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.003G164900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.004G124400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.004G237000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.007G022466 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.016G053500 | No alias | mitochondrial RNAediting factor 1 | 0.04 | Orthogroups_2024-Update | |
| Potri.016G065500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.018G040100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Seita.9G213100.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Sobic.002G007000.2 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G111700.6 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G356100.1 | No alias | RNA editing factor *(CRR2) | 0.02 | Orthogroups_2024-Update | |
| Solyc03g098420 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Sopen01g039430 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen01g041280 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen02g024180 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen03g038830 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen04g026710 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen05g018650 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g003140 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Predicted GO |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Predicted GO |
| BP | GO:0002682 | regulation of immune system process | IEP | Predicted GO |
| BP | GO:0002831 | regulation of response to biotic stimulus | IEP | Predicted GO |
| MF | GO:0003968 | RNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0003993 | acid phosphatase activity | IEP | Predicted GO |
| MF | GO:0004133 | glycogen debranching enzyme activity | IEP | Predicted GO |
| MF | GO:0004134 | 4-alpha-glucanotransferase activity | IEP | Predicted GO |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Predicted GO |
| BP | GO:0010112 | regulation of systemic acquired resistance | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| BP | GO:0031347 | regulation of defense response | IEP | Predicted GO |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Predicted GO |
| BP | GO:0032101 | regulation of response to external stimulus | IEP | Predicted GO |
| BP | GO:0043900 | regulation of multi-organism process | IEP | Predicted GO |
| BP | GO:0045088 | regulation of innate immune response | IEP | Predicted GO |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Predicted GO |
| BP | GO:0050776 | regulation of immune response | IEP | Predicted GO |
| BP | GO:0080134 | regulation of response to stress | IEP | Predicted GO |
| No external refs found! |