HORVU5Hr1G021730.2


Description : component *(uL2) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001760 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001760_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G021730.2
Cluster HCAA Clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
170971 No alias Ribosomal protein L2 family 0.08 Orthogroups_2024-Update
A4A49_56239 No alias 60s ribosomal protein l8 0.1 Orthogroups_2024-Update
A4A49_64891 No alias 60s ribosomal protein l8 0.03 Orthogroups_2024-Update
Bradi4g04120 No alias Ribosomal protein L2 family 0.13 Orthogroups_2024-Update
Brara.A00238.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Brara.G00216.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Brara.K01326.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Cre12.g535851 No alias Ribosomal protein L2 family 0.1 Orthogroups_2024-Update
Glyma.01G167300 No alias Ribosomal protein L2 family 0.15 Orthogroups_2024-Update
Glyma.02G049300 No alias Ribosomal protein L2 family 0.08 Orthogroups_2024-Update
Glyma.11G076000 No alias Ribosomal protein L2 family 0.06 Orthogroups_2024-Update
Glyma.16G129700 No alias Ribosomal protein L2 family 0.05 Orthogroups_2024-Update
Kfl00779_0020 kfl00779_0020_v1.1 (at4g36130 : 456.0) Ribosomal protein L2 family;... 0.04 Orthogroups_2024-Update
Mp7g01860.1 No alias component RPL8 of LSU proteome component 0.12 Orthogroups_2024-Update
Mp7g08730.1 No alias component RPL8 of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00025506-RA No alias (at4g36130 : 481.0) Ribosomal protein L2 family;... 0.05 Orthogroups_2024-Update
Potri.007G013100 No alias Ribosomal protein L2 family 0.05 Orthogroups_2024-Update
Pp1s37_247V6 No alias 60s ribosomal protein l2 0.13 Orthogroups_2024-Update
Seita.2G112000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Seita.3G330100.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.002G115000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.008G135000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Solyc07g063890 No alias No description available 0.07 Orthogroups_2024-Update
Solyc10g006580 No alias ribosomal protein L2 0.08 Orthogroups_2024-Update
Solyc12g005330 No alias Ribosomal protein L2 family (AHRD V3.3 *** AT4G36130.1) 0.23 Orthogroups_2024-Update
Sopen07g032020 No alias Ribosomal Proteins L2, C-terminal domain 0.22 Orthogroups_2024-Update
Sopen10g002530 No alias Ribosomal Proteins L2, C-terminal domain 0.17 Orthogroups_2024-Update
Sopen12g001310 No alias Ribosomal Proteins L2, C-terminal domain 0.13 Orthogroups_2024-Update
evm.model.contig_2057.10 No alias (at4g36130 : 380.0) Ribosomal protein L2 family;... 0.27 Orthogroups_2024-Update
evm.model.tig00020965.22 No alias (at2g18020 : 400.0) embryo defective 2296 (EMB2296);... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0010011 auxin binding IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0042562 hormone binding IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Predicted GO
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predicted GO
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 33 110
IPR022669 Ribosomal_L2_C 118 245
No external refs found!