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  5. HORVU5Hr1G046250.24

HORVU5Hr1G046250.24


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G046250.24
Cluster HCAA Clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
A4A49_21563 No alias e3 ubiquitin-protein ligase ring1 0.03 Orthogroups_2024-Update
GRMZM2G122848 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G157855 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G108300 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Glyma.18G218200 No alias RING/U-box superfamily protein 0.07 Orthogroups_2024-Update
Kfl00154_0250 kfl00154_0250_v1.1 (at3g19950 : 143.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
LOC_Os11g37230 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00002061-RA No alias (at3g19950 : 146.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00021656-RA No alias (at3g46620 : 181.0) zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
Pp1s223_128V6 No alias MPN9.20; zinc finger (C3HC4-type RING finger) family... 0.02 Orthogroups_2024-Update
Pp1s7_381V6 No alias abi3-interacting protein 2-1 protein 0.03 Orthogroups_2024-Update
Seita.1G222900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G178700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g009000 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G56580.3) 0.04 Orthogroups_2024-Update
Solyc08g067290 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G20910.1) 0.04 Orthogroups_2024-Update
Sopen03g029300 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 331 372
No external refs found!