HORVU5Hr1G050800.5

Description : Nonsense-Mediated mRNA Decay protein *(SMG7)

Gene families : OG_42_0003131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003131_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU5Hr1G050800.5
Cluster	HCAA Clusters: Cluster_257

Target	Alias	Description	ECC score	Gene Family Method
AC226230.2_FG001	No alias	Telomerase activating protein Est1	0.03	Orthogroups_2024-Update
MA_10435713g0020	No alias	(at5g19400 : 479.0) Encodes SMG7, a protein that...	0.02	Orthogroups_2024-Update
MA_32980g0010	No alias	(at5g19400 : 147.0) Encodes SMG7, a protein that...	0.03	Orthogroups_2024-Update
PSME_00016879-RA	No alias	(at5g19400 : 121.0) Encodes SMG7, a protein that...	0.02	Orthogroups_2024-Update
Potri.006G038500	No alias	Telomerase activating protein Est1	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0005096	GTPase activator activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005516	calmodulin binding	IEP	Predicted GO
BP	GO:0007034	vacuolar transport	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
MF	GO:0015631	tubulin binding	IEP	Predicted GO
MF	GO:0030695	GTPase regulator activity	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
MF	GO:0043015	gamma-tubulin binding	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR018834	DNA/RNA-bd_Est1-type	202	536
IPR019458	EST1	70	189

External Links

No external refs found!