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At3g15970


Description : Nuclear pore complex protein NUP50B [Source:UniProtKB/Swiss-Prot;Acc:Q9LW88]


Gene families : OG_42_0004029 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004029_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g15970
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
LOC_Os05g28190 No alias ranBP1 domain containing protein, expressed 0.03 Orthogroups_2024-Update
Mp5g18610.1 No alias NUP50 nucleoporin of nuclear pore complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA InterProScan predictions
BP GO:0046907 intracellular transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR000156 Ran_bind_dom 324 440
IPR015007 NUP2/50/61 13 77
No external refs found!