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  5. HORVU5Hr1G073680.3

HORVU5Hr1G073680.3


Description : small subunit of U2AF pre-RNA splicing auxiliary factor complex


Gene families : OG_42_0001056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G073680.3
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre06.g250950 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 Orthogroups_2024-Update
GRMZM2G177229 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
PSME_00027172-RA No alias (at5g42820 : 293.0) U2 auxiliary factor small subunit.... 0.02 Orthogroups_2024-Update
Pp1s215_70V6 No alias splicing factor u2af 38 kda subunit 0.02 Orthogroups_2024-Update
Sobic.002G249500.2 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Orthogroups_2024-Update
Sobic.009G232700.2 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Orthogroups_2024-Update
Solyc10g083640 No alias Zinc finger transcription factor 64 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 150 173
IPR000571 Znf_CCCH 14 38
IPR000504 RRM_dom 83 139
No external refs found!