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  5. HORVU5Hr1G084140.4

HORVU5Hr1G084140.4


Description : ASK-type linker component of SCF E3 ubiquitin ligase complexes


Gene families : OG_42_0000356 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G084140.4
Cluster HCAA Clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
At3g25650 No alias SKP1-like protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEL7] 0.03 Orthogroups_2024-Update
Glyma.02G045700 No alias S phase kinase-associated protein 1 0.03 Orthogroups_2024-Update
Glyma.16G123700 No alias S phase kinase-associated protein 1 0.06 Orthogroups_2024-Update
PSME_00029950-RA No alias (at5g42190 : 192.0) Similar to SKP1 in yeast and humans... 0.02 Orthogroups_2024-Update
Pp1s9_292V6 No alias e3 ubiquitin ligase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 82 139
IPR016072 Skp1_comp_dimer 193 240
No external refs found!