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At3g16850


Description : Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g16850
Cluster HCCA clusters: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
A4A49_27803 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
A4A49_41445 No alias putative polygalacturonase 0.05 Orthogroups_2024-Update
At3g48950 No alias Endo-polygalacturonase-like protein... 0.03 Orthogroups_2024-Update
Brara.C03174.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.F02946.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.09G256100 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.001G100000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G139100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G004900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sobic.010G005000.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sopen05g028340 No alias Glycosyl hydrolases family 28 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 135 415
IPR024535 Pectate_lyase_SF_prot 40 97
No external refs found!