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  5. HORVU5Hr1G095530.1

HORVU5Hr1G095530.1


Description : phytochrome photoreceptor *(PHY)


Gene families : OG_42_0001032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001032_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G095530.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G088500 No alias phytochrome E 0.03 Orthogroups_2024-Update
Kfl00003_0310 kfl00003_0310_v1.1 (p36505|phy1_phypa : 1432.0) Phytochrome 1 -... 0.02 Orthogroups_2024-Update
LOC_Os03g19590 No alias phytochrome B, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00032490-RA No alias (q40762|phy_picab : 1867.0) Phytochrome - Picea abies... 0.03 Orthogroups_2024-Update
PSME_00035511-RA No alias (q41046|phy_pinsy : 1735.0) Phytochrome - Pinus... 0.03 Orthogroups_2024-Update
Pp1s233_24V6 No alias phy1 gene for phytochrome protein PHY1 0.02 Orthogroups_2024-Update
Pp1s47_31V6 No alias phytochrome b 0.02 Orthogroups_2024-Update
Seita.9G113600.1 No alias phytochrome photoreceptor *(PHY) 0.05 Orthogroups_2024-Update
Solyc10g044670 No alias phytochrome A 0.02 Orthogroups_2024-Update
evm.model.tig00020510.131 No alias (p93528|phyc_sorbi : 202.0) Phytochrome C - Sorghum... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
BP GO:0009584 detection of visible light IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006361 transcription initiation from RNA polymerase I promoter IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
MF GO:0140223 general transcription initiation factor activity IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR013767 PAS_fold 623 686
IPR003018 GAF 219 401
IPR013515 Phytochrome_cen-reg 414 589
IPR013654 PAS_2 71 185
No external refs found!