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  5. HORVU5Hr1G113330.1

HORVU5Hr1G113330.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G113330.1
Cluster HCAA Clusters: Cluster_335

Target Alias Description ECC score Gene Family Method Actions
111891 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
32263 No alias mitochondrial editing factor 22 0.01 Orthogroups_2024-Update
A4A49_00959 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
A4A49_21718 No alias pentatricopeptide repeat-containing protein 0.01 Orthogroups_2024-Update
A4A49_23672 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.03 Orthogroups_2024-Update
AC216235.2_FG010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
At2g27610 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Orthogroups_2024-Update
At3g25970 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At4g15720 No alias Pentatricopeptide repeat-containing protein At4g15720... 0.05 Orthogroups_2024-Update
GRMZM2G000674 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G060536 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G077420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G144843 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G462417 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM5G849971 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G173200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G006900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G291800 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Orthogroups_2024-Update
Glyma.09G086600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G213300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Glyma.14G066100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G019670.6 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU2Hr1G053030.5 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU7Hr1G114390.1 No alias Unknown function 0.01 Orthogroups_2024-Update
LOC_Os02g07050 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g24150 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g12510 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g41040 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g28830 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g24640 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os11g01836 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g29360 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g06650 No alias tetratricopeptide-like helical, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os12g08140 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00024179-RA No alias (at1g11290 : 254.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00042876-RA No alias (at3g23330 : 160.0) Tetratricopeptide repeat (TPR)-like... 0.01 Orthogroups_2024-Update
Potri.018G035900 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
Seita.5G065900.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.5G460300.1 No alias RNA editing factor *(OTP72) 0.02 Orthogroups_2024-Update
Seita.7G164600.1 No alias RNA editing factor *(MEF12) 0.01 Orthogroups_2024-Update
Seita.7G298200.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.8G250500.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G339400.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G403900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G011800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Solyc04g082870 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Solyc06g076900 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.01 Orthogroups_2024-Update
Solyc11g005970 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g006700 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Solyc11g067210 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen09g022760 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 396 488
IPR002885 Pentatricopeptide_repeat 255 280
IPR002885 Pentatricopeptide_repeat 154 180
IPR002885 Pentatricopeptide_repeat 81 124
IPR002885 Pentatricopeptide_repeat 181 228
No external refs found!