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  5. HORVU5Hr1G114340.1

HORVU5Hr1G114340.1


Description : component *(NRPB1) of RNA polymerase II complex


Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G114340.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
A4A49_44191 No alias dna-directed rna polymerase iii subunit 1 0.03 Orthogroups_2024-Update
Brara.A00264.1 No alias component *(NRPB1) of RNA polymerase II complex 0.03 Orthogroups_2024-Update
HORVU2Hr1G126750.3 No alias component *(NRPB1) of RNA polymerase II complex 0.03 Orthogroups_2024-Update
HORVU7Hr1G071660.5 No alias component *(NRPB1) of RNA polymerase II complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA 16Dec
BP GO:0006351 transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 356 524
IPR007081 RNA_pol_Rpb1_5 829 864
IPR007083 RNA_pol_Rpb1_4 717 822
IPR007066 RNA_pol_Rpb1_3 528 691
IPR007080 RNA_pol_Rpb1_1 14 354
No external refs found!