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  5. HORVU6Hr1G005370.9

HORVU6Hr1G005370.9


Description : pre-mRNA-processing protein *(PRP40A/B)


Gene families : OG_42_0002795 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002795_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G005370.9
Cluster HCAA Clusters: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Glyma.14G089078 No alias pre-mRNA-processing protein 40A 0.04 Orthogroups_2024-Update
Pp1s100_243V6 No alias protein binding 0.02 Orthogroups_2024-Update
Sobic.003G179100.6 No alias pre-mRNA-processing protein *(PRP40A/B) 0.05 Orthogroups_2024-Update
Solyc11g044340 No alias pre-mRNA-processing protein 40A (AHRD V3.3 *** AT1G44910.1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR002713 FF_domain 563 610
IPR002713 FF_domain 426 475
IPR002713 FF_domain 635 690
IPR002713 FF_domain 493 543
IPR001202 WW_dom 228 254
IPR001202 WW_dom 187 213
No external refs found!