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  5. HORVU6Hr1G016850.1

HORVU6Hr1G016850.1


Description : component *(LHCb1/2/3) of LHC-II complex


Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G016850.1
Cluster HCAA Clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
270427 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.03 Orthogroups_2024-Update
407444 No alias light-harvesting chlorophyll B-binding protein 3 0.03 Orthogroups_2024-Update
423144 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
444370 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
446130 No alias photosystem I light harvesting complex gene 2 0.04 Orthogroups_2024-Update
75552 No alias photosystem II light harvesting complex gene 2.1 0.03 Orthogroups_2024-Update
A4A49_03871 No alias chlorophyll a-b binding protein 36, chloroplastic 0.06 Orthogroups_2024-Update
A4A49_14363 No alias chlorophyll a-b binding protein 21, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_14365 No alias chlorophyll a-b binding protein 21, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_24464 No alias chlorophyll a-b binding protein 36, chloroplastic 0.04 Orthogroups_2024-Update
A4A49_33198 No alias chlorophyll a-b binding protein p4, chloroplastic 0.05 Orthogroups_2024-Update
A4A49_64136 No alias chlorophyll a-b binding protein 13, chloroplastic 0.05 Orthogroups_2024-Update
AC207722.2_FG009 No alias photosystem II light harvesting complex gene B1B2 0.05 Orthogroups_2024-Update
At1g29910 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.05 Orthogroups_2024-Update
At1g76570 No alias Chlorophyll a-b binding protein 7, chloroplastic... 0.02 Orthogroups_2024-Update
At2g05070 No alias Chlorophyll a-b binding protein 2.2, chloroplastic... 0.03 Orthogroups_2024-Update
At2g34430 No alias Chlorophyll a-b binding protein, chloroplastic... 0.04 Orthogroups_2024-Update
At3g27690 No alias Chlorophyll a-b binding protein, chloroplastic... 0.06 Orthogroups_2024-Update
At3g47470 No alias Chlorophyll a-b binding protein, chloroplastic... 0.04 Orthogroups_2024-Update
At3g54890 No alias Chlorophyll a-b binding protein, chloroplastic... 0.03 Orthogroups_2024-Update
At4g10340 No alias Chlorophyll a-b binding protein, chloroplastic... 0.03 Orthogroups_2024-Update
At5g54270 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.03 Orthogroups_2024-Update
Bradi1g12130 No alias chlorophyll A/B binding protein 1 0.04 Orthogroups_2024-Update
Bradi1g15290 No alias photosystem II light harvesting complex gene 2.3 0.03 Orthogroups_2024-Update
Bradi1g23610 No alias photosystem I light harvesting complex gene 2 0.04 Orthogroups_2024-Update
Bradi1g24760 No alias light-harvesting chlorophyll B-binding protein 3 0.03 Orthogroups_2024-Update
Bradi1g42670 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
Bradi2g16271 No alias chlorophyll A/B binding protein 1 0.05 Orthogroups_2024-Update
Bradi2g16282 No alias photosystem II light harvesting complex gene B1B2 0.06 Orthogroups_2024-Update
Bradi3g36760 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.04 Orthogroups_2024-Update
Bradi4g21170 No alias light harvesting complex of photosystem II 5 0.04 Orthogroups_2024-Update
Bradi4g30060 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.08 Orthogroups_2024-Update
Bradi4g37210 No alias photosystem II light harvesting complex gene B1B2 0.04 Orthogroups_2024-Update
Brara.B03307.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.C01741.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.C02638.1 No alias component *(LHCb5) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.C04035.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.D02090.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.E00980.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E00981.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.F03187.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.G01647.1 No alias component *(LHCa1) of LHC-I complex 0.03 Orthogroups_2024-Update
Brara.I02856.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.I03747.1 No alias component *(LHCa1) of LHC-I complex 0.03 Orthogroups_2024-Update
Brara.J00907.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Cre06.g283950 No alias photosystem II light harvesting complex gene 2.1 0.02 Orthogroups_2024-Update
GRMZM2G057281 No alias light-harvesting chlorophyll B-binding protein 3 0.05 Orthogroups_2024-Update
GRMZM2G072280 No alias photosystem I light harvesting complex gene 2 0.07 Orthogroups_2024-Update
GRMZM2G153184 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.06 Orthogroups_2024-Update
GRMZM2G160268 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.05 Orthogroups_2024-Update
Glyma.02G064700 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
Glyma.02G080800 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Glyma.02G305400 No alias photosystem II light harvesting complex gene 2.1 0.03 Orthogroups_2024-Update
Glyma.03G262300 No alias photosystem I light harvesting complex gene 2 0.03 Orthogroups_2024-Update
Glyma.05G128000 No alias chlorophyll A/B binding protein 1 0.03 Orthogroups_2024-Update
Glyma.06G194900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.03 Orthogroups_2024-Update
Glyma.08G082900 No alias chlorophyll A/B binding protein 1 0.03 Orthogroups_2024-Update
Glyma.12G219300 No alias light-harvesting chlorophyll B-binding protein 3 0.02 Orthogroups_2024-Update
Glyma.13G282000 No alias light-harvesting chlorophyll B-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.16G145800 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
Glyma.16G165200 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Glyma.16G205200 No alias light harvesting complex of photosystem II 5 0.02 Orthogroups_2024-Update
Glyma.20G212900 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
Kfl00009_0500 kfl00009_0500_v1.... (p13869|cb12_pethy : 139.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
Kfl00009_0510 kfl00009_0510_v1.1 (at3g54890 : 130.0) Encodes a component of the light... 0.02 Orthogroups_2024-Update
LOC_Os01g52240 No alias chlorophyll A-B binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g52650 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g37550 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os11g13890 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_131587g0010 No alias (p15194|cb2b_pinsy : 453.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g05980.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06720.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Orthogroups_2024-Update
Mp7g06750.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Orthogroups_2024-Update
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Orthogroups_2024-Update
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
PSME_00045363-RA No alias (at3g54890 : 352.0) Encodes a component of the light... 0.02 Orthogroups_2024-Update
PSME_00054494-RA No alias (p10049|cb21_pinth : 389.0) Chlorophyll a-b binding... 0.02 Orthogroups_2024-Update
Potri.001G407100 No alias light-harvesting chlorophyll B-binding protein 3 0.04 Orthogroups_2024-Update
Potri.003G171500 No alias photosystem I light harvesting complex gene 2 0.03 Orthogroups_2024-Update
Potri.011G079500 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Pp1s161_32V6 No alias lhca1.2 gene for putative chlorophyll a-b binding protein Lhca1.2 0.02 Orthogroups_2024-Update
Pp1s182_81V6 No alias chlorophyll a b binding 0.03 Orthogroups_2024-Update
Pp1s19_13V6 No alias light-harvesting complex ii protein lhcb2 0.03 Orthogroups_2024-Update
Pp1s241_66V6 No alias chlorophyll a-b binding protein 0.02 Orthogroups_2024-Update
Pp1s27_97V6 No alias light-harvesting complex ii protein lhcb2 0.02 Orthogroups_2024-Update
Pp1s76_196V6 No alias chlorophyll a b binding 0.02 Orthogroups_2024-Update
Seita.2G299200.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Seita.2G352900.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Seita.6G158500.1 No alias component *(LHCa4) of LHC-I complex 0.04 Orthogroups_2024-Update
Seita.8G080900.1 No alias component *(LHCb5) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.001G177000.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
Sobic.002G288300.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.05 Orthogroups_2024-Update
Sobic.002G339200.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
Sobic.002G352100.1 No alias component *(LHCa2) of LHC-I complex 0.06 Orthogroups_2024-Update
Sobic.003G209800.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.003G209900.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
Sobic.004G056900.1 No alias component *(LHCa1) of LHC-I complex 0.05 Orthogroups_2024-Update
Sobic.005G087000.1 No alias component *(LHCb5) of LHC-II complex 0.05 Orthogroups_2024-Update
Sobic.007G136900.1 No alias component *(LHCa4) of LHC-I complex 0.06 Orthogroups_2024-Update
Sobic.009G234600.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
Solyc02g070940 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc02g070970 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g070980 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g070990 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g071000 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g071010 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g071030 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g005770 No alias chlorophyll a/b-binding protein 0.03 Orthogroups_2024-Update
Solyc03g005790 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g115900 No alias chlorophyll a-b binding protein CAB11 0.04 Orthogroups_2024-Update
Solyc05g056050 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc06g069730 No alias chlorophyll a-b binding protein Cab12 0.03 Orthogroups_2024-Update
Solyc07g063600 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc08g067320 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc08g067330 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc10g006230 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc12g006140 No alias Cab-5 gene encoding chlorophyll a/b-binding protein 0.03 Orthogroups_2024-Update
Solyc12g009200 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Sopen02g019860 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020040 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020070 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020080 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen02g020090 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen03g001770 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen03g001780 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen03g001790 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen03g001810 No alias Chlorophyll A-B binding protein 0.05 Orthogroups_2024-Update
Sopen05g034460 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen06g027030 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen07g011840 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen07g031780 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen08g021280 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen12g002100 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen12g004150 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen12g006800 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
MF GO:0005384 manganese ion transmembrane transporter activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0030026 cellular manganese ion homeostasis IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055071 manganese ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 66 232
No external refs found!