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  5. HORVU6Hr1G018830.4

HORVU6Hr1G018830.4


Description : component *(uL3c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0007933 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007933_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G018830.4
Cluster HCAA Clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
430901 No alias Ribosomal protein L3 family protein 0.05 Orthogroups_2024-Update
A4A49_14193 No alias 50s ribosomal protein l3, chloroplastic 0.05 Orthogroups_2024-Update
Bradi3g03270 No alias Ribosomal protein L3 family protein 0.14 Orthogroups_2024-Update
Cre48.g761197 No alias Ribosomal protein L3 family protein 0.13 Orthogroups_2024-Update
Glyma.06G001800 No alias Ribosomal protein L3 family protein 0.08 Orthogroups_2024-Update
Kfl00188_0090 kfl00188_0090_v1.1 (o80360|rk3_tobac : 273.0) 50S ribosomal protein L3,... 0.07 Orthogroups_2024-Update
MA_10432831g0010 No alias (at2g43030 : 375.0) Ribosomal protein L3 family protein;... 0.04 Orthogroups_2024-Update
Potri.013G070100 No alias Ribosomal protein L3 family protein 0.09 Orthogroups_2024-Update
Pp1s117_86V6 No alias 50s ribosomal protein l3 0.04 Orthogroups_2024-Update
Pp1s144_93V6 No alias 50s ribosomal protein l3 0.06 Orthogroups_2024-Update
Seita.1G093900.1 No alias component *(uL3c) of large plastid ribosomal-subunit proteome 0.15 Orthogroups_2024-Update
Sobic.004G034500.1 No alias component *(uL3c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Solyc06g051200 No alias Ribosomal protein L3 family protein (AHRD V3.3 *** AT2G43030.1) 0.05 Orthogroups_2024-Update
Sopen06g017110 No alias Ribosomal protein L3 0.15 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predicted GO
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 143 230
No external refs found!