1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU6Hr1G027050.1

HORVU6Hr1G027050.1


Description : component *(NRPC1) of RNA polymerase III complex


Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G027050.1
Cluster HCAA Clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
evm.model.tig00022075.5 No alias (at5g60040 : 328.0) Encodes a subunit of RNA polymerase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA 16Dec
BP GO:0006351 transcription, DNA-templated IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 379 545
IPR007081 RNA_pol_Rpb1_5 871 1358
IPR007083 RNA_pol_Rpb1_4 760 864
IPR007080 RNA_pol_Rpb1_1 22 377
IPR007066 RNA_pol_Rpb1_3 548 733
No external refs found!