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  5. At3g20250

At3g20250


Description : PUM5 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRW8]


Gene families : OG_42_0003031 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003031_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g20250
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
A4A49_21311 No alias pumilio-like 5 0.02 Orthogroups_2024-Update
GRMZM2G449123 No alias pumilio 5 0.03 Orthogroups_2024-Update
Glyma.15G163900 No alias pumilio 5 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 726 751
IPR001313 Pumilio_RNA-bd_rpt 766 795
IPR001313 Pumilio_RNA-bd_rpt 841 872
IPR001313 Pumilio_RNA-bd_rpt 582 610
IPR001313 Pumilio_RNA-bd_rpt 798 831
IPR001313 Pumilio_RNA-bd_rpt 655 684
IPR001313 Pumilio_RNA-bd_rpt 619 649
IPR001313 Pumilio_RNA-bd_rpt 689 711
No external refs found!