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  5. Solyc03g083530

Solyc03g083530


Description : 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN)


Gene families : OG_42_0001410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001410_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g083530
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
440805 No alias ribosomal protein S13A 0.03 Orthogroups_2024-Update
A4A49_64599 No alias 40s ribosomal protein s13 0.03 Orthogroups_2024-Update
Bradi3g13810 No alias ribosomal protein S13A 0.05 Orthogroups_2024-Update
Brara.D02734.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.E00496.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.G01898.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.I04191.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre07.g331900 No alias ribosomal protein S13A 0.05 Orthogroups_2024-Update
GRMZM2G112050 No alias ribosomal protein S13A 0.04 Orthogroups_2024-Update
GRMZM2G158034 No alias ribosomal protein S13A 0.03 Orthogroups_2024-Update
Glyma.05G052300 No alias ribosomal protein S13A 0.07 Orthogroups_2024-Update
Glyma.05G052600 No alias ribosomal protein S13A 0.07 Orthogroups_2024-Update
HORVU7Hr1G075250.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Kfl00229_0020 kfl00229_0020_v1.1 (p62302|rs13_soybn : 266.0) 40S ribosomal protein S13 -... 0.04 Orthogroups_2024-Update
MA_141232g0010 No alias (p62302|rs13_soybn : 291.0) 40S ribosomal protein S13 -... 0.06 Orthogroups_2024-Update
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00021950-RA No alias (p62302|rs13_soybn : 223.0) 40S ribosomal protein S13 -... 0.03 Orthogroups_2024-Update
Potri.002G146800 No alias Ribosomal protein S13/S15 0.05 Orthogroups_2024-Update
Potri.014G068600 No alias Ribosomal protein S13/S15 0.04 Orthogroups_2024-Update
Pp1s39_130V6 No alias 40s ribosomal protein s13 0.08 Orthogroups_2024-Update
Pp1s97_272V6 No alias 40s ribosomal protein s13 0.05 Orthogroups_2024-Update
Seita.6G084900.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Seita.6G085100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.007G019000.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.007G019400.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Solyc11g072260 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.04 Orthogroups_2024-Update
Sopen03g023340 No alias Ribosomal S13/S15 N-terminal domain 0.05 Orthogroups_2024-Update
Sopen05g029470 No alias Ribosomal S13/S15 N-terminal domain 0.05 Orthogroups_2024-Update
evm.model.contig_3443.6 No alias (p62302|rs13_soybn : 220.0) 40S ribosomal protein S13 -... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000390 spliceosomal complex disassembly IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005684 U2-type spliceosomal complex IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0032988 ribonucleoprotein complex disassembly IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0071008 U2-type post-mRNA release spliceosomal complex IEP Predicted GO
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 60
IPR000589 Ribosomal_S15 74 146
No external refs found!