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  5. HORVU6Hr1G059150.1

HORVU6Hr1G059150.1


Description : component *(UPF2) of RNA quality control Exon Junction complex


Gene families : OG_42_0004320 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004320_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G059150.1
Cluster HCAA Clusters: Cluster_308

Target Alias Description ECC score Gene Family Method Actions
At2g39260 No alias Regulator of nonsense transcripts UPF2... 0.02 Orthogroups_2024-Update
Bradi3g49427 No alias binding;RNA binding 0.02 Orthogroups_2024-Update
Seita.1G242900.1 No alias component *(UPF2) of RNA quality control Exon Junction complex 0.02 Orthogroups_2024-Update
Sobic.004G223000.1 No alias component *(UPF2) of RNA quality control Exon Junction complex 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 678 872
IPR003890 MIF4G-like_typ-3 474 660
IPR007193 Upf2/Nmd2_C 989 1124
No external refs found!