Description : TruA-type tRNA pseudouridine synthase & EC_5.4 intramolecular transferase
Gene families : OG_42_0004796 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004796_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Hordeum vulgare: HORVU6Hr1G064480.1 | |
Cluster | HCAA Clusters: Cluster_193 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Kfl00032_0510 | kfl00032_0510_v1.1 | (at1g20370 : 204.0) Pseudouridine synthase family... | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g44810 | No alias | tRNA pseudouridine synthase family protein, putative, expressed | 0.03 | Orthogroups_2024-Update | |
Mp7g06450.1 | No alias | tRNA pseudouridine synthase (TruA) | 0.02 | Orthogroups_2024-Update | |
Seita.1G266700.1 | No alias | TruA-type tRNA pseudouridine synthase & EC_5.4... | 0.03 | Orthogroups_2024-Update | |
Sobic.004G287100.1 | No alias | TruA-type tRNA pseudouridine synthase & EC_5.4... | 0.08 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | 16Dec |
MF | GO:0003723 | RNA binding | IEA | 16Dec |
BP | GO:0009451 | RNA modification | IEA | 16Dec |
MF | GO:0009982 | pseudouridine synthase activity | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
MF | GO:0008565 | protein transporter activity | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032977 | membrane insertase activity | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR020097 | PsdUridine_synth_TruA_a/b_dom | 397 | 502 |
No external refs found! |