At3g21870

Description : Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]

Gene families : OG_42_0000447 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000447_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At3g21870
Cluster	HCCA clusters: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
A4A49_34485	No alias	cyclin-u4-1	0.03	Orthogroups_2024-Update
Brara.E02035.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.04	Orthogroups_2024-Update
GRMZM2G148621	No alias	cyclin p2;1	0.04	Orthogroups_2024-Update
Glyma.09G245400	No alias	cyclin p4;1	0.05	Orthogroups_2024-Update
Glyma.13G306600	No alias	cyclin p2;1	0.06	Orthogroups_2024-Update
LOC_Os04g53680	No alias	cyclin, putative, expressed	0.03	Orthogroups_2024-Update
PSME_00015828-RA	No alias	(at2g44740 : 200.0) cyclin p4;1 (CYCP4;1); CONTAINS...	0.03	Orthogroups_2024-Update
Potri.002G143400	No alias	cyclin p3;2	0.03	Orthogroups_2024-Update
Potri.005G209800	No alias	cyclin p1;1	0.03	Orthogroups_2024-Update
Pp1s44_106V6	No alias	No description available	0.02	Orthogroups_2024-Update
Seita.7G247700.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.04	Orthogroups_2024-Update
Sobic.006G225200.2	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.07	Orthogroups_2024-Update
Solyc03g093790	No alias	cyclinU4_2	0.02	Orthogroups_2024-Update
Solyc07g052610	No alias	cyclinU1_1	0.04	Orthogroups_2024-Update
Sopen03g024690	No alias	Cyclin	0.02	Orthogroups_2024-Update
Sopen07g026220	No alias	Cyclin	0.06	Orthogroups_2024-Update
evm.model.contig_554.8	No alias	(at2g44740 : 128.0) cyclin p4;1 (CYCP4;1); CONTAINS...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEA	InterProScan predictions
BP	GO:0001932	regulation of protein phosphorylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	None	Extended
MF	GO:0019901	protein kinase binding	IEA	InterProScan predictions
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0042325	regulation of phosphorylation	None	Extended
BP	GO:0043549	regulation of kinase activity	None	Extended
BP	GO:0045859	regulation of protein kinase activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051338	regulation of transferase activity	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071900	regulation of protein serine/threonine kinase activity	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Predicted GO
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Predicted GO
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predicted GO
MF	GO:0004089	carbonate dehydratase activity	IEP	Predicted GO
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Predicted GO
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Predicted GO
MF	GO:0005215	transporter activity	IEP	Predicted GO
MF	GO:0005319	lipid transporter activity	IEP	Predicted GO
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Predicted GO
CC	GO:0005886	plasma membrane	IEP	Predicted GO
BP	GO:0005984	disaccharide metabolic process	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
BP	GO:0006814	sodium ion transport	IEP	Predicted GO
BP	GO:0006825	copper ion transport	IEP	Predicted GO
BP	GO:0006855	drug transmembrane transport	IEP	Predicted GO
BP	GO:0006869	lipid transport	IEP	Predicted GO
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0015238	drug transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015893	drug transport	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO
BP	GO:0016567	protein ubiquitination	IEP	Predicted GO
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predicted GO
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predicted GO
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Predicted GO
BP	GO:0035434	copper ion transmembrane transport	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0061024	membrane organization	IEP	Predicted GO
MF	GO:0070279	vitamin B6 binding	IEP	Predicted GO
MF	GO:0071949	FAD binding	IEP	Predicted GO
BP	GO:0120009	intermembrane lipid transfer	IEP	Predicted GO
MF	GO:0120013	intermembrane lipid transfer activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013922	Cyclin_PHO80-like	55	161

External Links

No external refs found!

At3g21870

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation