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  5. HORVU6Hr1G093030.1

HORVU6Hr1G093030.1


Description : component *(bL9c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0005907 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005907_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G093030.1
Cluster HCAA Clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
270732 No alias ribosomal protein L9 0.02 Orthogroups_2024-Update
At3g44890 No alias RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7] 0.03 Orthogroups_2024-Update
Bradi3g56060 No alias ribosomal protein L9 0.16 Orthogroups_2024-Update
Brara.A02342.1 No alias component *(bL9c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Cre12.g556050 No alias ribosomal protein L9 0.14 Orthogroups_2024-Update
Glyma.12G081500 No alias ribosomal protein L9 0.05 Orthogroups_2024-Update
Kfl00603_0090 kfl00603_0090_v1.1 (p11894|rk9_pea : 121.0) 50S ribosomal protein L9,... 0.13 Orthogroups_2024-Update
MA_8767694g0010 No alias (at3g44890 : 134.0) Plastid ribosomal protein CL9;... 0.07 Orthogroups_2024-Update
Mp1g05730.1 No alias component psRPL9 of large ribosomal subunit proteome 0.07 Orthogroups_2024-Update
Potri.004G217000 No alias ribosomal protein L9 0.07 Orthogroups_2024-Update
Pp1s536_10V6 No alias 50s ribosomal protein l9 0.04 Orthogroups_2024-Update
Pp1s536_9V6 No alias 50s ribosomal protein l9 0.03 Orthogroups_2024-Update
Seita.2G253200.1 No alias component *(bL9c) of large plastid ribosomal-subunit proteome 0.15 Orthogroups_2024-Update
Sobic.004G335800.1 No alias component *(bL9c) of large plastid ribosomal-subunit proteome 0.13 Orthogroups_2024-Update
Solyc11g066410 No alias 50S ribosomal protein L9 (AHRD V3.3 *** A0A0A9CWP8_ARUDO) 0.07 Orthogroups_2024-Update
Sopen11g026160 No alias Ribosomal protein L9, C-terminal domain 0.07 Orthogroups_2024-Update
evm.model.tig00000169.8 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005381 iron ion transmembrane transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006826 iron ion transport IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034755 iron ion transmembrane transport IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR020070 Ribosomal_L9_N 68 114
IPR020069 Ribosomal_L9_C 130 213
No external refs found!