Description : component *(uL6) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0002219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002219_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Hordeum vulgare: HORVU7Hr1G002060.1 | |
Cluster | HCAA Clusters: Cluster_145 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
269009 | No alias | Ribosomal protein L6 family | 0.17 | Orthogroups_2024-Update | |
A4A49_13754 | No alias | 60s ribosomal protein l9-1 | 0.04 | Orthogroups_2024-Update | |
At4g10450 | No alias | 60S ribosomal protein L9-2... | 0.05 | Orthogroups_2024-Update | |
Bradi1g21850 | No alias | Ribosomal protein L6 family | 0.08 | Orthogroups_2024-Update | |
Bradi1g52040 | No alias | Ribosomal protein L6 family | 0.05 | Orthogroups_2024-Update | |
Bradi3g00640 | No alias | Ribosomal protein L6 family | 0.06 | Orthogroups_2024-Update | |
Brara.B02434.1 | No alias | component *(uL6) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
Brara.B02733.1 | No alias | component *(uL6) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
Brara.I02353.1 | No alias | component *(uL6) of large ribosomal-subunit (LSU) proteome | 0.18 | Orthogroups_2024-Update | |
Brara.I02694.1 | No alias | component *(uL6) of large ribosomal-subunit (LSU) proteome | 0.2 | Orthogroups_2024-Update | |
Cre12.g494050 | No alias | Ribosomal protein L6 family | 0.14 | Orthogroups_2024-Update | |
Glyma.04G226500 | No alias | Ribosomal protein L6 family | 0.06 | Orthogroups_2024-Update | |
Glyma.04G226900 | No alias | Ribosomal protein L6 family | 0.17 | Orthogroups_2024-Update | |
Glyma.06G138400 | No alias | Ribosomal protein L6 family | 0.06 | Orthogroups_2024-Update | |
Glyma.06G138600 | No alias | Ribosomal protein L6 family | 0.06 | Orthogroups_2024-Update | |
HORVU3Hr1G001140.5 | No alias | component *(uL6) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Kfl00025_0220 | kfl00025_0220_v1.1 | (p30707|rl9_pea : 285.0) 60S ribosomal protein L9... | 0.09 | Orthogroups_2024-Update | |
MA_38141g0010 | No alias | (p49210|rl9_orysa : 311.0) 60S ribosomal protein L9 -... | 0.08 | Orthogroups_2024-Update | |
Mp4g24070.1 | No alias | component RPL9 of LSU proteome component | 0.07 | Orthogroups_2024-Update | |
PSME_00050084-RA | No alias | (p49210|rl9_orysa : 311.0) 60S ribosomal protein L9 -... | 0.02 | Orthogroups_2024-Update | |
Potri.001G454000 | No alias | Ribosomal protein L6 family | 0.07 | Orthogroups_2024-Update | |
Potri.011G148700 | No alias | Ribosomal protein L6 family | 0.12 | Orthogroups_2024-Update | |
Pp1s164_98V6 | No alias | 60s ribosomal protein l9 | 0.07 | Orthogroups_2024-Update | |
Pp1s327_43V6 | No alias | 60s ribosomal protein l9 | 0.15 | Orthogroups_2024-Update | |
Pp1s58_149V6 | No alias | 60s ribosomal protein l9 | 0.18 | Orthogroups_2024-Update | |
Pp1s79_157V6 | No alias | 60s ribosomal protein l9 | 0.22 | Orthogroups_2024-Update | |
Seita.1G003100.1 | No alias | component *(uL6) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
Seita.4G005200.1 | No alias | component *(uL6) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.010G005300.1 | No alias | component *(uL6) of large ribosomal-subunit (LSU) proteome | 0.2 | Orthogroups_2024-Update | |
Solyc08g014550 | No alias | 60S ribosomal L9 (AHRD V3.3 *** A0A0B0N9P7_GOSAR) | 0.15 | Orthogroups_2024-Update | |
Solyc12g096700 | No alias | 60S ribosomal L9 (AHRD V3.3 *** A0A0B0N9P7_GOSAR) | 0.11 | Orthogroups_2024-Update | |
Sopen06g029670 | No alias | Ribosomal protein L6 | 0.26 | Orthogroups_2024-Update | |
Sopen08g005520 | No alias | Ribosomal protein L6 | 0.07 | Orthogroups_2024-Update | |
Sopen12g032530 | No alias | Ribosomal protein L6 | 0.24 | Orthogroups_2024-Update | |
evm.model.contig_564.5 | No alias | (at4g10450 : 215.0) Ribosomal protein L6 family;... | 0.27 | Orthogroups_2024-Update | |
evm.model.tig00001532.12 | No alias | (p49210|rl9_orysa : 196.0) 60S ribosomal protein L9 -... | 0.07 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
CC | GO:0005840 | ribosome | IEA | 16Dec |
BP | GO:0006412 | translation | IEA | 16Dec |
MF | GO:0019843 | rRNA binding | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000159 | protein phosphatase type 2A complex | IEP | Predicted GO |
MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Predicted GO |
MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Predicted GO |
CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predicted GO |
BP | GO:0006378 | mRNA polyadenylation | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Predicted GO |
CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Predicted GO |
CC | GO:0008287 | protein serine/threonine phosphatase complex | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0019208 | phosphatase regulator activity | IEP | Predicted GO |
MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0019888 | protein phosphatase regulator activity | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Predicted GO |
CC | GO:1903293 | phosphatase complex | IEP | Predicted GO |
No external refs found! |