1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At3g23330

At3g23330


Description : Putative pentatricopeptide repeat-containing protein At3g23330 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW63]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g23330
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
A4A49_21718 No alias pentatricopeptide repeat-containing protein 0.04 Orthogroups_2024-Update
At2g34400 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Orthogroups_2024-Update
Bradi1g60637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.G02157.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G163359 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G150300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G068100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G112100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G015970.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G035330.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G073540.14 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g58100 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g33920 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g06650 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00011508-RA No alias (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00013943-RA No alias (at3g23330 : 569.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00032006-RA No alias (at2g13600 : 367.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00037812-RA No alias (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00044695-RA No alias (at2g22070 : 545.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Seita.2G177900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
Seita.3G244200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G028800.1 No alias RNA editing factor *(PGN) 0.01 Orthogroups_2024-Update
Sobic.001G161100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.03 Orthogroups_2024-Update
Sopen01g038630 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g041720 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g003140 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen12g032340 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
CC GO:0000796 condensin complex IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0003972 RNA ligase (ATP) activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
CC GO:0008290 F-actin capping protein complex IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0008452 RNA ligase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010639 negative regulation of organelle organization IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
BP GO:0030832 regulation of actin filament length IEP Predicted GO
BP GO:0030833 regulation of actin filament polymerization IEP Predicted GO
BP GO:0030834 regulation of actin filament depolymerization IEP Predicted GO
BP GO:0030835 negative regulation of actin filament depolymerization IEP Predicted GO
BP GO:0030837 negative regulation of actin filament polymerization IEP Predicted GO
BP GO:0031333 negative regulation of protein complex assembly IEP Predicted GO
BP GO:0032271 regulation of protein polymerization IEP Predicted GO
BP GO:0032272 negative regulation of protein polymerization IEP Predicted GO
BP GO:0032535 regulation of cellular component size IEP Predicted GO
BP GO:0032956 regulation of actin cytoskeleton organization IEP Predicted GO
BP GO:0032970 regulation of actin filament-based process IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043242 negative regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0043254 regulation of protein complex assembly IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0051016 barbed-end actin filament capping IEP Predicted GO
BP GO:0051129 negative regulation of cellular component organization IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051493 regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051494 negative regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051693 actin filament capping IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090066 regulation of anatomical structure size IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0110053 regulation of actin filament organization IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901879 regulation of protein depolymerization IEP Predicted GO
BP GO:1901880 negative regulation of protein depolymerization IEP Predicted GO
BP GO:1902903 regulation of supramolecular fiber organization IEP Predicted GO
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 581 704
IPR002885 Pentatricopeptide_repeat 554 577
IPR002885 Pentatricopeptide_repeat 483 507
IPR002885 Pentatricopeptide_repeat 382 404
IPR002885 Pentatricopeptide_repeat 309 354
IPR002885 Pentatricopeptide_repeat 205 249
IPR002885 Pentatricopeptide_repeat 408 455
No external refs found!