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  5. HORVU7Hr1G030840.1

HORVU7Hr1G030840.1


Description : RNA editing factor *(MEF29)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G030840.1
Cluster HCAA Clusters: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
A4A49_19306 No alias pentatricopeptide repeat-containing protein,... 0.02 Orthogroups_2024-Update
Bradi1g68870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g53377 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g58450 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Brara.A02032.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.A03228.1 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
Brara.B00951.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03980.1 No alias RNA editing factor *(MEF25) 0.03 Orthogroups_2024-Update
Brara.E02932.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
Brara.F00971.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F03861.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H01750.1 No alias RNA editing factor *(SLO4) 0.03 Orthogroups_2024-Update
Glyma.10G277600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G001100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G209700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
MA_10428121g0010 No alias (at4g37170 : 449.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_474261g0010 No alias (at3g12770 : 471.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00011210-RA No alias (at1g15510 : 705.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00020124-RA No alias (at5g09950 : 677.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00039504-RA No alias (at4g13650 : 612.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00042901-RA No alias (at4g33170 : 526.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
Potri.001G066100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G217600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G243800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G048800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G083900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G137200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G092400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s186_64V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Seita.4G100100.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.9G007900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.9G489500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G336400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g020340 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g051480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g011150 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 483 530
IPR002885 Pentatricopeptide_repeat 386 430
IPR002885 Pentatricopeptide_repeat 284 313
IPR002885 Pentatricopeptide_repeat 357 382
IPR002885 Pentatricopeptide_repeat 255 279
IPR002885 Pentatricopeptide_repeat 559 582
IPR032867 DYW_dom 700 792
No external refs found!