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At3g23960


Description : Putative F-box protein At3g23960 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR1]


Gene families : OG_42_0000317 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000317_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g23960
Cluster HCCA clusters: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
At2g15640 No alias F-box protein At2g15640 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF0] 0.04 Orthogroups_2024-Update
At3g56670 No alias Probable F-box protein At3g56670... 0.04 Orthogroups_2024-Update
At5g52620 No alias Putative F-box protein At5g52620... 0.04 Orthogroups_2024-Update
Brara.F02195.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J00073.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.J00273.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 31 59
IPR013187 F-box-assoc_dom_typ3 236 359
No external refs found!