1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU7Hr1G035280.2

HORVU7Hr1G035280.2


Description : component *(SPT5) of SPT4/5 transcription elongation factor complex


Gene families : OG_42_0003156 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003156_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G035280.2
Cluster HCAA Clusters: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Bradi1g46230 No alias global transcription factor group A2 0.03 Orthogroups_2024-Update
Kfl00017_0540 kfl00017_0540_v1.1 (at4g08350 : 625.0) global transcription factor group A2... 0.02 Orthogroups_2024-Update
LOC_Os06g10620 No alias transcription elongation factor SPT5 homolog 1,... 0.02 Orthogroups_2024-Update
MA_10434986g0010 No alias (at4g08350 : 1091.0) global transcription factor group... 0.02 Orthogroups_2024-Update
Potri.004G162500 No alias global transcription factor group A2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR005824 KOW 489 516
IPR005100 NGN-domain 193 274
IPR022581 Spt5_N 99 187
No external refs found!