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At3g24220


Description : 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]


Gene families : OG_42_0000424 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g24220
Cluster HCCA clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
A4A49_16982 No alias 9-cis-epoxycarotenoid dioxygenase nced1, chloroplastic 0.04 Orthogroups_2024-Update
At4g18350 No alias 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic... 0.05 Orthogroups_2024-Update
Brara.A00958.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update
Brara.A01020.1 No alias carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... 0.03 Orthogroups_2024-Update
Brara.B02322.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update
Brara.E02677.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update
Brara.G03580.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update
Brara.H01021.1 No alias carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... 0.03 Orthogroups_2024-Update
Brara.I04483.1 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.05 Orthogroups_2024-Update
GRMZM2G110192 No alias nine-cis-epoxycarotenoid dioxygenase 4 0.03 Orthogroups_2024-Update
Glyma.08G176300 No alias nine-cis-epoxycarotenoid dioxygenase 3 0.04 Orthogroups_2024-Update
LOC_Os02g47510 No alias 9-cis-epoxycarotenoid dioxygenase 1, chloroplast... 0.02 Orthogroups_2024-Update
LOC_Os12g42280 No alias 9-cis-epoxycarotenoid dioxygenase 1, chloroplast... 0.02 Orthogroups_2024-Update
PSME_00056713-RA No alias (at4g19170 : 585.0) chloroplast-targeted member of a... 0.02 Orthogroups_2024-Update
Potri.001G265600 No alias carotenoid cleavage dioxygenase 1 0.03 Orthogroups_2024-Update
Potri.011G112400 No alias nine-cis-epoxycarotenoid dioxygenase 3 0.04 Orthogroups_2024-Update
Sobic.002G037400.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update
Solyc08g016720 No alias 9-cis-epoxycarotenoid dioxygenase2 0.03 Orthogroups_2024-Update
Sopen01g034310 No alias Retinal pigment epithelial membrane protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 106 568
No external refs found!