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  5. HORVU7Hr1G052190.1

HORVU7Hr1G052190.1


Description : plastidial RNA splicing factor *(CFM3)


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G052190.1
Cluster HCAA Clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G041700 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
LOC_Os04g39060 No alias CRS1/YhbY domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g37990 No alias chloroplastic group IIA intron splicing facilitator... 0.03 Orthogroups_2024-Update
PSME_00012098-RA No alias (at3g01370 : 522.0) Encodes a protein containing a CRM... 0.02 Orthogroups_2024-Update
Solyc03g119450 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004564 beta-fructofuranosidase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 193 276
IPR001890 RNA-binding_CRM 610 696
IPR001890 RNA-binding_CRM 398 481
No external refs found!