Description : 60S ribosomal protein L13a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRX8]
Gene families : OG_42_0002020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002020_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Arabidopsis release: At3g24830 | |
Cluster | HCCA clusters: Cluster_35 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi1g08260 | No alias | Ribosomal protein L13 family protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g59280 | No alias | Ribosomal protein L13 family protein | 0.04 | Orthogroups_2024-Update | |
Brara.C03976.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.F02982.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Brara.G00660.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.I00372.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Cre12.g532550 | No alias | Ribosomal protein L13 family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G024000 | No alias | Ribosomal protein L13 family protein | 0.03 | Orthogroups_2024-Update | |
Potri.002G242600 | No alias | Ribosomal protein L13 family protein | 0.04 | Orthogroups_2024-Update | |
Potri.017G054600 | No alias | Ribosomal protein L13 family protein | 0.03 | Orthogroups_2024-Update | |
Pp1s165_40V6 | No alias | 60s ribosomal protein | 0.06 | Orthogroups_2024-Update | |
Pp1s174_48V6 | No alias | 60s ribosomal protein | 0.05 | Orthogroups_2024-Update | |
Pp1s63_162V6 | No alias | 60s ribosomal protein | 0.05 | Orthogroups_2024-Update | |
Pp1s80_110V6 | No alias | 60s ribosomal protein | 0.05 | Orthogroups_2024-Update | |
Seita.9G087700.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Sobic.001G085400.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.009G022400.1 | No alias | component *(uL13) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Solyc05g053670 | No alias | 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... | 0.05 | Orthogroups_2024-Update | |
Solyc09g091740 | No alias | 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... | 0.06 | Orthogroups_2024-Update | |
Solyc12g098330 | No alias | 60S ribosomal protein L13a-like protein (AHRD V3.3 ***... | 0.05 | Orthogroups_2024-Update | |
Sopen05g032170 | No alias | Ribosomal protein L13 | 0.05 | Orthogroups_2024-Update | |
Sopen09g034630 | No alias | Ribosomal protein L13 | 0.05 | Orthogroups_2024-Update | |
Sopen12g033110 | No alias | Ribosomal protein L13 | 0.04 | Orthogroups_2024-Update | |
evm.model.contig_3478.11 | No alias | (at3g24830 : 235.0) Ribosomal protein L13 family... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00000792.29 | No alias | (at3g24830 : 242.0) Ribosomal protein L13 family... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000075 | cell cycle checkpoint | IEP | Predicted GO |
BP | GO:0000077 | DNA damage checkpoint | IEP | Predicted GO |
MF | GO:0003678 | DNA helicase activity | IEP | Predicted GO |
MF | GO:0004126 | cytidine deaminase activity | IEP | Predicted GO |
MF | GO:0004252 | serine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0004576 | oligosaccharyl transferase activity | IEP | Predicted GO |
MF | GO:0004579 | dolichyl-diphosphooligosaccharide-protein glycotransferase activity | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
CC | GO:0005783 | endoplasmic reticulum | IEP | Predicted GO |
BP | GO:0006213 | pyrimidine nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0006216 | cytidine catabolic process | IEP | Predicted GO |
MF | GO:0008238 | exopeptidase activity | IEP | Predicted GO |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009164 | nucleoside catabolic process | IEP | Predicted GO |
BP | GO:0009972 | cytidine deamination | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0019239 | deaminase activity | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
CC | GO:0030896 | checkpoint clamp complex | IEP | Predicted GO |
BP | GO:0031570 | DNA integrity checkpoint | IEP | Predicted GO |
BP | GO:0034656 | nucleobase-containing small molecule catabolic process | IEP | Predicted GO |
BP | GO:0042454 | ribonucleoside catabolic process | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
BP | GO:0045786 | negative regulation of cell cycle | IEP | Predicted GO |
BP | GO:0046087 | cytidine metabolic process | IEP | Predicted GO |
BP | GO:0046131 | pyrimidine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0046133 | pyrimidine ribonucleoside catabolic process | IEP | Predicted GO |
BP | GO:0046135 | pyrimidine nucleoside catabolic process | IEP | Predicted GO |
MF | GO:0070008 | serine-type exopeptidase activity | IEP | Predicted GO |
BP | GO:0072529 | pyrimidine-containing compound catabolic process | IEP | Predicted GO |
BP | GO:1901658 | glycosyl compound catabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005822 | Ribosomal_L13 | 12 | 118 |
No external refs found! |