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  5. HORVU7Hr1G058940.2

HORVU7Hr1G058940.2


Description : plastidial ribonucleoprotein *(CP31)


Gene families : OG_42_0004215 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G058940.2
Cluster HCAA Clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
At4g24770 No alias 31 kDa ribonucleoprotein, chloroplastic... 0.03 Orthogroups_2024-Update
Bradi3g42700 No alias 31-kDa RNA binding protein 0.07 Orthogroups_2024-Update
Bradi4g38260 No alias 31-kDa RNA binding protein 0.06 Orthogroups_2024-Update
Brara.A01480.1 No alias plastidial ribonucleoprotein *(CP31) 0.1 Orthogroups_2024-Update
Brara.H01598.1 No alias plastidial ribonucleoprotein *(CP31) 0.09 Orthogroups_2024-Update
Brara.K01485.1 No alias plastidial ribonucleoprotein *(CP31) 0.07 Orthogroups_2024-Update
GRMZM2G011129 No alias 31-kDa RNA binding protein 0.03 Orthogroups_2024-Update
Glyma.04G190100 No alias 31-kDa RNA binding protein 0.07 Orthogroups_2024-Update
Glyma.05G043200 No alias chloroplast RNA-binding protein 31B 0.04 Orthogroups_2024-Update
Glyma.06G175400 No alias 31-kDa RNA binding protein 0.05 Orthogroups_2024-Update
Glyma.17G125700 No alias 31-kDa RNA binding protein 0.08 Orthogroups_2024-Update
LOC_Os08g44290 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.012G090200 No alias 31-kDa RNA binding protein 0.04 Orthogroups_2024-Update
Sobic.002G131700.1 No alias plastidial ribonucleoprotein *(CP31) 0.03 Orthogroups_2024-Update
Solyc03g111840 No alias RNA-binding protein (AHRD V3.3 *** A0A0K9NVY1_ZOSMR) 0.03 Orthogroups_2024-Update
Sopen03g030940 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 216 285
IPR000504 RRM_dom 121 190
No external refs found!