HORVU7Hr1G071660.5

Description : component *(NRPB1) of RNA polymerase II complex

Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU7Hr1G071660.5
Cluster	HCAA Clusters: Cluster_223

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g00507	No alias	nuclear RNA polymerase C1	0.03	Orthogroups_2024-Update
Brara.A00264.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.02	Orthogroups_2024-Update
HORVU5Hr1G114340.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	16Dec
BP	GO:0006366	transcription by RNA polymerase II	IEA	16Dec
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Predicted GO
MF	GO:0005216	ion channel activity	IEP	Predicted GO
MF	GO:0005244	voltage-gated ion channel activity	IEP	Predicted GO
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Predicted GO
MF	GO:0005253	anion channel activity	IEP	Predicted GO
MF	GO:0005254	chloride channel activity	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
BP	GO:0006821	chloride transport	IEP	Predicted GO
BP	GO:0006996	organelle organization	IEP	Predicted GO
BP	GO:0007010	cytoskeleton organization	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
MF	GO:0008308	voltage-gated anion channel activity	IEP	Predicted GO
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
BP	GO:0015698	inorganic anion transport	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022832	voltage-gated channel activity	IEP	Predicted GO
MF	GO:0022836	gated channel activity	IEP	Predicted GO
MF	GO:0022838	substrate-specific channel activity	IEP	Predicted GO
MF	GO:0022839	ion gated channel activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007073	RNA_pol_Rpb1_7	1061	1195
IPR007081	RNA_pol_Rpb1_5	726	1316
IPR007066	RNA_pol_Rpb1_3	425	588
IPR007075	RNA_pol_Rpb1_6	792	976
IPR000722	RNA_pol_asu	253	421
IPR007080	RNA_pol_Rpb1_1	8	251
IPR007083	RNA_pol_Rpb1_4	615	719
IPR000684	RNA_pol_II_repeat_euk	1508	1521
IPR000684	RNA_pol_II_repeat_euk	1494	1507
IPR000684	RNA_pol_II_repeat_euk	1522	1535
IPR000684	RNA_pol_II_repeat_euk	1634	1647
IPR000684	RNA_pol_II_repeat_euk	1648	1661
IPR000684	RNA_pol_II_repeat_euk	1620	1633
IPR000684	RNA_pol_II_repeat_euk	1564	1577
IPR000684	RNA_pol_II_repeat_euk	1480	1493
IPR000684	RNA_pol_II_repeat_euk	1592	1605
IPR000684	RNA_pol_II_repeat_euk	1473	1486
IPR000684	RNA_pol_II_repeat_euk	1606	1619
IPR000684	RNA_pol_II_repeat_euk	1686	1699
IPR000684	RNA_pol_II_repeat_euk	1466	1479
IPR000684	RNA_pol_II_repeat_euk	1681	1692
IPR000684	RNA_pol_II_repeat_euk	1550	1563
IPR000684	RNA_pol_II_repeat_euk	1536	1549
IPR000684	RNA_pol_II_repeat_euk	1578	1591

External Links

No external refs found!

HORVU7Hr1G071660.5

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation