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  5. At3g25520

At3g25520


Description : RPL5A [Source:UniProtKB/TrEMBL;Acc:A0A178V891]


Gene families : OG_42_0001609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001609_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g25520
Cluster HCCA clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
144921 No alias ribosomal protein L5 0.02 Orthogroups_2024-Update
Bradi1g13630 No alias ribosomal protein L5 B 0.03 Orthogroups_2024-Update
Bradi4g13640 No alias ribosomal protein L5 0.03 Orthogroups_2024-Update
Brara.C04001.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.C04002.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.G00424.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Glyma.07G059900 No alias ribosomal protein L5 B 0.05 Orthogroups_2024-Update
Glyma.07G060000 No alias ribosomal protein L5 B 0.05 Orthogroups_2024-Update
Glyma.13G280200 No alias ribosomal protein L5 B 0.03 Orthogroups_2024-Update
Glyma.16G028800 No alias ribosomal protein L5 B 0.04 Orthogroups_2024-Update
HORVU5Hr1G092630.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
LOC_Os01g67134 No alias ribosomal L18p/L5e family protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_70965g0010 No alias (q6unt2|rl5_cucsa : 417.0) 60S ribosomal protein L5 -... 0.04 Orthogroups_2024-Update
Mp4g15800.1 No alias component RPL5 of LSU proteome component 0.04 Orthogroups_2024-Update
Pp1s364_3V6 No alias ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s38_329V6 No alias ribosomal protein 0.06 Orthogroups_2024-Update
Seita.5G413500.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.003G387900.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc06g082870 No alias 60S ribosomal protein L5-like protein (AHRD V3.3 ***... 0.08 Orthogroups_2024-Update
Sopen06g034230 No alias Ribosomal L18p/L5e family 0.02 Orthogroups_2024-Update
evm.model.contig_3443.5 No alias (q6unt2|rl5_cucsa : 302.0) 60S ribosomal protein L5 -... 0.04 Orthogroups_2024-Update
evm.model.tig00000194.49 No alias (o65353|rl5_helan : 322.0) 60S ribosomal protein L5 -... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0008097 5S rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008531 riboflavin kinase activity IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0030014 CCR4-NOT complex IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR025607 Rbsml_L5e/L18P_C 191 280
IPR005485 Rbsml_L5_euk/L18_arc 14 175
No external refs found!