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  5. HORVU7Hr1G078490.1

HORVU7Hr1G078490.1


Description : lignin polymerization scaffold protein *(CASP)


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G078490.1
Cluster HCAA Clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
A4A49_11943 No alias casp-like protein 1c2 0.03 Orthogroups_2024-Update
A4A49_21870 No alias casp-like protein 1b2 0.04 Orthogroups_2024-Update
A4A49_22807 No alias casparian strip membrane protein 2 0.02 Orthogroups_2024-Update
At4g15610 No alias CASP-like protein 1D1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE29] 0.03 Orthogroups_2024-Update
Bradi4g02050 No alias Uncharacterised protein family (UPF0497) 0.02 Orthogroups_2024-Update
Brara.F03733.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os06g12500 No alias membrane associated DUF588 domain containing protein,... 0.03 Orthogroups_2024-Update
Potri.006G208800 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Potri.011G154900 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 60 206
No external refs found!