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At3g25970


Description : Putative pentatricopeptide repeat-containing protein At3g25970 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU94]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g25970
Cluster HCCA clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Bradi1g36900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g68870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g22520 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
Glyma.04G078800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G113330.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g41120 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g39090 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os09g24640 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_25584g0010 No alias (at4g18750 : 529.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc06g076900 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g041720 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0046039 GTP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 140 162
IPR002885 Pentatricopeptide_repeat 240 262
IPR002885 Pentatricopeptide_repeat 39 64
IPR002885 Pentatricopeptide_repeat 168 195
IPR002885 Pentatricopeptide_repeat 268 315
IPR002885 Pentatricopeptide_repeat 371 418
IPR002885 Pentatricopeptide_repeat 65 112
IPR002885 Pentatricopeptide_repeat 474 521
No external refs found!