1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU7Hr1G099910.4

HORVU7Hr1G099910.4


Description : Unknown function


Gene families : OG_42_0001457 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G099910.4
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
74408 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
MA_10429462g0020 No alias (at1g12775 : 293.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Solyc07g047820 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 760 788
IPR002885 Pentatricopeptide_repeat 293 321
IPR002885 Pentatricopeptide_repeat 251 282
IPR002885 Pentatricopeptide_repeat 533 580
IPR002885 Pentatricopeptide_repeat 464 510
IPR002885 Pentatricopeptide_repeat 186 234
IPR002885 Pentatricopeptide_repeat 686 734
IPR002885 Pentatricopeptide_repeat 394 443
IPR002885 Pentatricopeptide_repeat 601 649
IPR002885 Pentatricopeptide_repeat 45 94
IPR002885 Pentatricopeptide_repeat 324 371
IPR002885 Pentatricopeptide_repeat 116 164
No external refs found!