1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU7Hr1G113760.11

HORVU7Hr1G113760.11


Description : component *(TAF5) of SAGA transcription co-activator complex


Gene families : OG_42_0003798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003798_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G113760.11
Cluster HCAA Clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
Seita.4G196300.1 No alias component *(TAF5) of SAGA transcription co-activator complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007582 TFIID_NTD2 48 176
IPR001680 WD40_repeat 334 365
IPR001680 WD40_repeat 442 477
IPR001680 WD40_repeat 565 603
IPR001680 WD40_repeat 482 519
IPR001680 WD40_repeat 523 561
IPR001680 WD40_repeat 402 435
No external refs found!