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  5. HORVU7Hr1G115580.1

HORVU7Hr1G115580.1


Description : formamidopyrimidine-DNA glycosylase *(FPG1)


Gene families : OG_42_0004977 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004977_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G115580.1
Cluster HCAA Clusters: Cluster_230


Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA 16Dec
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA 16Dec
BP GO:0006284 base-excision repair IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEA 16Dec
MF GO:0019104 DNA N-glycosylase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012319 FPG_cat 1 132
IPR015886 DNA_glyclase/AP_lyase_DNA-bd 147 233
No external refs found!