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  5. HORVU7Hr1G117550.1

HORVU7Hr1G117550.1


Description : SSU processome assembly factor *(SWA1)


Gene families : OG_42_0006079 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006079_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G117550.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
At2g47990 No alias Protein SLOW WALKER 1 [Source:UniProtKB/Swiss-Prot;Acc:O82266] 0.03 Orthogroups_2024-Update
Bradi1g53790 No alias transducin family protein / WD-40 repeat family protein 0.07 Orthogroups_2024-Update
Brara.C00238.1 No alias SSU processome assembly factor *(SWA1) 0.02 Orthogroups_2024-Update
Cre03.g196850 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Glyma.10G022600 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
LOC_Os07g12320 No alias WD domain, G-beta repeat domain containing protein, expressed 0.03 Orthogroups_2024-Update
Potri.014G135600 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Pp1s62_85V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.7G244600.1 No alias SSU processome assembly factor *(SWA1) 0.05 Orthogroups_2024-Update
Sobic.007G137350.1 No alias SSU processome assembly factor *(SWA1) 0.08 Orthogroups_2024-Update
Sopen05g006280 No alias UTP15 C terminal 0.04 Orthogroups_2024-Update
evm.model.contig_3524.8 No alias (at2g47990 : 220.0) Encodes a transducin family... 0.04 Orthogroups_2024-Update
evm.model.tig00020927.23 No alias (at2g47990 : 191.0) Encodes a transducin family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
CC GO:0005730 nucleolus IEA 16Dec
BP GO:0006364 rRNA processing IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR018983 U3_snoRNA-assocProt_15_C 399 542
IPR001680 WD40_repeat 238 267
IPR001680 WD40_repeat 208 226
No external refs found!